The aim of this study was to assess the impact of different vegetation on the distribution of rainfall (due to throughfall and stemflow), water regime, and Al and SO4 2- leaching from forest soils. The water flow and Al and SO4 2- transport were modeled using HYDRUS-1D. The study was performed at two elevation transects on the Paličník and Smědava Mountain in Jizera mountains. Podzols and Cambisols were prevailing soil units in this area. It was shown that the effect of the precipitation redistribution on water regime was considerable in the beech forest, while it was almost negligible in the spruce forest. Redistribution of precipitation under trees caused runoff (in one case), increased water discharge through the soil profile bottom, reduction of water storage in the soil, and thus reduction of root water uptake. Simulated Al leaching from the soil profile was determined mainly by the initial Al content in the soil profile bottom. Leaching of SO4 2- was mainly determined by its initial content in the soil and to a lesser extent by redistributed precipitation and SO4 2- deposition.