In the years 1999-2002, first studies were carried out on the metazoan parasites of Atlantic salmon (Salmo salar L.) recently reintroduced into the Elbe River drainage system, after more than 50 years after the complete extinction of the Elbe salmon population. A total of six helminth species were recorded from salmon smolts from three streams of the Elbe River basin (Kamenice River, Ještědský and Libočanský Brooks) in North Bohemia, Czech Republic, where S. salar fingerlings have been released since 1998: Gyrodactylus truttae Gläser, 1974, Crepidostomum metoecus Braun, 1900, Diplostomum spathaceum (Rudolphi, 1819) metacercariae, Raphidascaris acus (Bloch, 1799) adults and encapsulated larvae, Cystidicoloides ephemeridarum (Linstow, 1872), and Neoechinorhynchus rutili (Müller, 1780). Except for D. spathaceum, all these freshwater parasites have been received from the helminth fauna of the co-habiting brown trout (Salmo trutta fario L.). Due to local ecological conditions, the parasite faunae of both salmon and brown trout exhibited distinct qualitative and quantitative differences in the three localities. The finding of G. truttae on S. salar represents a new host record. Three helminth parasites of marine origin, the cestodes Eubothrium crassum (Bloch, 1779) and Scolex pleuronectis Müller, 1788 plerocercoids, and the nematode Anisakis simplex (Rudolphi, 1809) larvae were found in the single examined adult S. salar from the Kamenice River. New data on the geographical distribution of some nematode parasites of Salmo trutta fario L., Barbatula barbatula (L.) and Anguilla anguilla (L.) are presented.