This paper develops an Adaptive Wavelet Neural Network Control (AWNNC) algorithm for radar active heat dissipation system. The radar core processor belongs to a highly precision component which consists of the electronic device of radio frequency integrated circuit (RFIC) with high power and high performance. The radar core processor should be operated in a narrowly closed environment without convection, which will increase the heat sink effect inside the core processor and further affect its reliability and life-time. The AWNNC comprises a wavelet neural network (WNN) controller and a robust compensator. The WNN controller is a principal tracking controller which is utilized to mimic an ideal controller; and the parameters of WNN are online tuned by the derived adaptation laws based on the gradient descent method. The robust compensator is designed to dispel the approximation error between the ideal controller and the WNN controller, thus the asymptotic stability of the closedloop system can be achieved. Based on National Instruments-PCI extensions for Instrumentation (NI-PXI) system, combined the Thermo Electric Cooler (TEC) with a duct heater, active heat dissipation intelligent control system is designed to fix the problem of heat dissipation in long distance in a narrowly closed environment without convection. According to the amount of thermal source and thermal energy, the smart control system can help to adjust the rate of heat dissipation by taking advantage of an adaptive control so that the performance of heat dissipation may be accumulated by its numbers. Last but not least, compared the traditional analog circuit controller with adaptive wavelet neural network controller, the research proves that its proposed active heat dissipation intelligent control system can reach an excellent and accurate temperature control. Speaking more precisely, adaptive wavelet neural network controller can be easily adaptive to any environment. It is equipped with a good capability of tracking and searching; and in terms of the effect of temperature control, it never actually jitters due to an input of voltage saturation compared with traditional analog circuit controller. All these can make chips able to adjust its adaptive rate of heat dissipation in accordance with the thermal source of the chips in a narrowly closed environment without convection.