Two species of the genus Baruscapillaria Moravec, 1982 are known to parasitise the small intestine of the common cormorant, Phalacrocorax carbo (L.): Baruscapillaria carbonis (Dubinin et Dubinina, 1940) and B. rudolphii Moravec, Scholz et Našincová, 1994. A redescription of the former species, based on specimens collected from common cormorants shot in South Bohemia, Czech Republic, is provided. Morphological features distinguishing B. carbonis and B. rudolphii are specified. B. carbonis is characterised mainly by the well-developed membranous bursa in the male, composed of five distinct lobes (four lateral and one spur-shaped dorsal); the length of the spicule is 1.9-2.3 mm; gravid females are provided with a long vulvar appendage. Males of B. rudolphii have reduced, bi-lobed membranous bursa and the spicule is 0.9-1.3 mm long; the vulvar appendage is absent in gravid females. This is the first record of B. carbonis in the Czech Republic.