This review updates the information on the actual status and distribution of freshwater gobies in Bosnia and Herzegovina. The available literature has been critically reviewed to provide more complete and up-to-date information. Consequently four species are proposed for removal from the national checklist, given the lack of any data to support their presence: Knipowitschia panizzae, Pomatoschistus microps, Proterorhinus marmoratus and Zosterisessor ophiocephalus. Therefore, the freshwater gobiid fauna is confirmed to include seven species from six genera. The Adriatic Sea basin (Neretva River catchment) is inhabited by three endemic species: Knipowitschia radovici, Orsinigobius croaticus and Ninnigobius canestrinii, while the Black Sea basin (Danube River catchment) is inhabited by the invasive species: Babka gymnotrachelus, Neogobius fluviatilis, Neogobius melanostomus and Ponticola kessleri. However, due to the possibility of misidentify the finding of B. gymnotrachelus is questionable and needs confirmation. Distribution of both endemic Knipowitschia and Orsinogobius species is restricted to small areas in the lower Neretva River catchment on both sides of the Croatia-Bosnia and Herzegovina border. The vulnerability of these species is discussed, and the IUCN conservation and units meriting conservation attention were identified. The invasive character of other species is highlighted. This review indicates that the knowledge on the Bosnia-Herzegovinian freshwater gobiid fauna is still far from complete, hence this up-to-date checklist can serve as a basis for further ecological and zoogeographical studies. For better species inventory, finer scale distribution surveys are needed, followed by detailed morphological, molecular phylogenetic and ecological studies.