Phylogenetic relationships of 27 species within the genus Ochotona were reconstructed through mitochondrial cytochrome b gene. Maximum parsimony, neighbor-joining and maximum likelihood analysis strongly indicated five major species groups: the northern group, the surrounding Qinghai-Tibet Plateau group, the Qinghai-Tibet Plateau group, the Huanghe group, and the Central Asia group. The northern group is composed of O. alpina, O. hyperborea, O. pallasi, O. princeps, and . The surrounding Qinghai-Tibet Plateau group includes O. macrotis, O. roylei, O. ladacensis, O. rutila, O. erythrotis, O. gloveri, O. brookei, O. muliensis, O. iliensis, O. himalayana, O. koslowi, O. forresti, and O. rufescens. The Qinghai-Tibet Plateau group contains O. curzoniae, O. thibetana, O. cansus, O. annectens, O. nubrica, O. daurica, and O. thomasi. The Huanghe group and the Central Asia group comprise only one species, O. huangensis and O. pusilla, respectively. Our data did not support the previous subgeneric classification. The phylogenetic trees suggested that divergences of the five groups occurred in the Early Pleistocene (about 2.8 Myr ago), and that the differentiation of the surrounding Qinghai-Tibet Plateau group, the Qinghai-Tibet Plateau group, and the Huanghe group was closely related to the uplifting of the Qinghai-Tibet Plateau and the radiation prompted by environmental changes could play a major role in these groups. Due to the relatively stable environments, however, differentiations were not so strong within the northern group and the Central Asia group, which had never invaded the Qinghai-Tibet Plateau.
1_External morphological characters were used to reconstruct a phylogeny of the mite family Syringophilidae (Acariformes: Cheyletoidea), which are permanent parasites inhabiting the quills of bird feathers. A total of 53 syringophilid genera and 79 characters were included in the data matrix; maximum parsimony (MP) and Bayesian analyses (BA) were performed to determine their phylogenetic relationships. The consensus of unweighted MP trees was weakly resolved. Only four generic groups were recognized: Aulonastus + Krantziaulonastus (i) and (Creagonycha + Kethleyana) + (Megasyringophilus + Selenonycha) (ii) – both with low Bremer support (BS 1); the subfamily Picobiinae – Picobia, Calamincola, Columbiphilus (Neopicobia + Rafapicobia) (BS 12) (iii) and Psittaciphilus generic group – (Meitingsunes + Psittaciphilus) (Peristerophila + (Neoperisterophila + (Castosyringophilus + Terratosyringophilus))) (BS 2) (iv). BA revealed a consensus tree with a topology similar to MP. The two main groups recognized by MP, the subfamily Picobiinae and Psittaciphilus, both received the highest support of 1; while two other groups recognized by MP – Aulonastus + Krantziaulonastus and (Creagonycha + Kethleyana) + (Megasyringophilus + Selenonycha) received relatively low support of 0.73–74 and 0.76–77, respectively., 2_The consensus of re-weighted MP trees was almost fully resolved but, the majority of the generic groups, excluding the Picobiinae and Psittaciphilus were supported by just a few non-unique synapomorphies with a high probability of homoplastic origin. The most intriguing result is the paraphyly of the Syringophilinae in respect to picobiines. The pattern of the re-weighted tree demonstrates only patches of parallel evolution at the level of syringophilid genera and bird orders. Perhaps horizontal shifts on phylogenetically distant hosts and colonization of quill (calamus) types other than primaries and secondaries were also important in the evolution of the syringophilids., Maciej Skoracki, Eliza Glowska, Andre V. Bochkov., and Obsahuje seznam literatury
We described the genetic variation of cytochrome b gene sequences of blind mole rats in Turkey. We examined 47 individuals belonging to nine cytotypes of three superspecies Nannospalax leucodon, N. xanthodon and N. ehrenbergi in the 402bp gene sequence of cytochrome b. Phylogenetic analyses showed that relationships between cytotypes were well supported, but deeper divergence between species showed insignificant relationships. Cytotypes of N. xanthodon with low diploid number of chromosomes from western Turkey formed a monophyletic group distinct from the populations with higher number of chromosomes (2n = 56-60). The monophyly of N. xanthodon was supported with respect to N. leucodon (2n = 56) in the Bayesian and maximum likelihood phylogenies. The divergence between two analyzed cytotypes of N. ehrenbergi (2n = 52, 2n = 56) was 9.4 %, and the Kilis cytotype (2n = 52) appeared as the basal branch of the whole analysed dataset. N. ehrenbergi cytotypes were paraphyletic and they formed unsupported relationships with previously described N. galili (2n = 52), N. golani (2n = 54), N. carmeli (2n = 58) and N. judaei (2n = 60) from Israel. The results of this study showed that the Nannospalax species complex most likely represents more species than currently recognized, especially in N. xanthodon. We suggest that cytotypes of N. xanthodon and N. ehrenbergi from Turkey should be investigated in detail as possible candidates for being separate species.
Adaptive immunity is commonly viewed as a unique vertebrate feature. A misleading view on vertebrate longevity compared to non-vertebrate animals together with oversimplification of ‘invertebrate’ phylogeny sometimes serves for justifying the limitation of adaptive immunity exclusively to vertebrates. However, here we emphasise that the borderline for differentiation between ‘innate’ and ‘adaptive’ immunity may be fuzzy and artificial. In each taxon, the feature of bearing a particular immunological mechanism should reflect its costs and benefits in a given ecological context. Hence, in invertebrates with a long lifespan some kind of acquired immunity could be expected. Indeed, several recent studies support this view. We therefore stress that the definition of ‘adaptivity’ of immune response should reflect the system function instead of a certain molecular mechanism adopted. If these altered criteria are considered then several pieces of recent evidence indicate that the adaptive immunity in animals might have arisen several times independently and in very different forms.
The phylogeographic pattern of the temperate shrub Lonicera nigra (Caprifoliaceae) in Europe was inferred from molecular and fossil data. Population samples and pollen data from most of the contemporary natural distribution were analysed. While chloroplast DNA sequences revealed no intraspecific variation, AFLP data show a non-random geographic pattern. Two genetically different groups, distinguished by Bayesian clustering, divided the distribution area of L. nigra into south-western and north-eastern regions with a contact zone situated approximately in the upper part of the Danube Valley. Iberian populations constitute an additional distinct genetic group. Pollen evidence supports the genetic data, indicating that L. nigra might have survived in glacial refugia located in Central Europe. Nevertheless, this evidence should be considered only as indicative and supplementary, as an unambiguous determination of the species is not possible based on the information on pollen in the literature.
Cicerbita alpina was selected to elucidate the phylogeography of tall-herb species, an ecological group whose Quaternary history is rarely addressed. This species is a typical component of subalpine herbaceous communities in the mountains of Europe. Samples collected for this study comprised the entire range of species, with a focus on those in the Carpathians. The analysis based on AFLP fingerprinting revealed a lack of a strong phylogeographical structure implying that the different parts of the present-day range have not been isolated for a long period of time probably due to the biological characteristics of the species, such as its ability to disperse over great distances. However, the genetic structure indicates some phylogeographical trends, which may reflect traces of survival in local refugia and subsequent diversification into separate lineages during the last glacial period. Within the Carpathians, the division into the Western and South-Eastern Carpathian population groups is apparent. This division is maintained at a larger scale. In particular, the South-Eastern Carpathian group is similar to the Balkan populations, while the Western Carpathian populations are closely related to those in the Eastern Alps and Sudetes. The Scandinavian populations also have a genetic affinity with the latter group and originated from a source in the Eastern Alps or Western Carpathians, presumably via a stepping stone in a northern refugium.
Tomicus piniperda is a pest in pine stands in Eurasia and is also found in the USA, where it has caused a decline in the abundance of pine since 1992. Knowledge of the genetic structure of pine shoot beetle populations is important for understanding their phylogeographic history and for quarantine control. In this study, European, Asian and American T. piniperda populations were analyzed by sequencing a region of the mitochondrial COI gene. Twenty-five haplotypes (HT) were detected and over 70% of these HT were found in individual areas, e.g. 5 HT in China, 5 HT in France and 3 HT in Spain. Nested clade analysis revealed that most European and the American population was in a clade containing 9 HT connected by one to two mutational steps. A second clade contained HT from France (2 HT), Spain (2 HT), Sweden (1 HT), Russia (1 HT) and China (5 HT). In this clade, one to 13 mutational steps and 13 missing or theoretical HT were detected. The third clade had 5 HT from France, Russia, Poland, Finland and Switzerland; 1 to 7 mutational steps and 5 missing or theoretical HT were detected. Although only a few significant relationships were found in the nested clade analysis, the following conclusions can be drawn: (1) T. piniperda is a polymorphic species with numerous HT throughout Europe, and HT are likely to exist regarding the missing or theoretical HT; (2) It is likely there were refugial areas in Southern Europe and Western Russia; (3) The Pyrenees formed a barrier to migration after the last ice age; (4) Chinese and European populations have been separated for at least 0.6 MYA.
The genetic variation of the forest dormouse Dryomys nitedula (Pallas, 1779) from isolated populations of Russian Plain and the Caucasus was investigated using cytochrome b gene (cytb). The genetic distance calculated between these populations of forest dormouse was 9.94 %, which corresponds to the typical distance between biological species of mammals. The genetic distance of cytb between Western and Central Caucasus forest dormouse populations is also significant, 6.0 %. Probably, there was a long-term isolation of European and Caucasian areas of D. nitedula during the whole Pleistocene.