Giardiasis is a common gastrointestinal infection of humans and animals with a worldwide distribution. Eight genetic groups (known as assemblages A to H) are currently recognised within the species complex of Giardia duodenalis (Lambl, 1859), of which assemblages A and B are responsible for infection of humans and other mammalian hosts. Genotyping data on giardiasis are not available from Slovenia. In this work, we have characterised isolates of G. duodenalis from 85 human symptomatic cases collected during 2002-2013. Genomic DNAs were first tested by a real-time (rt) PCR assay and then by conventional PCR at three loci (beta-giardin, bg; triose phosphate isomerase, tpi; and glutamate dehydrogenase, gdh). We found that the threshold cycle (Ct) values in rt-PCR testing were higher for samples collected during 2002-2005 and that this was paralleled by a low amplification rate in conventional PCR (6 of 32, i.e. 19%). In contrast, lower Ct values and higher amplification rate (45 of 53; 85%) were observed for samples collected during 2006-2013, suggesting an adverse effect of prolonged freezing of stools. Assemblages A and B were found with an almost identical frequency in the 51 genotyped samples. In agreement with previous studies, sequences from assemblage B isolates were characterised by larger genetic variability and by the presence of heterogeneous positions, which made assignment to specific genotypes difficult. Less variability was observed in sequences from assemblage A isolates, which belonged to the human-specific subassemblage AII. These data showed that the genotypes of G. duodenalis that circulate in humans in Slovenia are similar to those previously identified in Europe., Barbara Šoba, Sabina Islamović, Miha Skvarč, Simone M. Cacciò., and Obsahuje bibliografii
We studied the effects of the overstory canopy cover on ground-dwelling harvestmen communities in European beech forests in the Western Carpathian Mts. We analyzed the differences in species richness, abundance and composition in two tree canopy cover categories (closed and open canopy). Overall, 1765 individuals belonging to 16 species were caught using pitfall traps. Repeated-measures ANOVA revealed that under both closed and open canopies a similar absolute and rarefied species richness and number of individuals (standardized to 100 pitfall trap days) were caught, and that both species richness and abundance were affected by the season (i.e., time of trap replacement); yet the total number of individuals trapped was more than two times greater under the open canopy than under the closed canopy. Despite the subtle differences in the taxonomic composition of the catches under the open and closed canopies revealed by DCA followed by RDA, the composition of ground-dwelling harvestmen assemblages differed under the two canopy covers. The open canopy was more suitable for heliophilic, xerothermic eurytopic harvestmen species typical for open and ecotonal habitats, such as Egaenus convexus (C.L. Koch) and Oligolophus tridens (C.L. Koch) but still suitable for hemihygrophilic Lophopilio palpinalis (Herbst). The closed canopy stands were preferred by shade-tolerant, hygrophilic eurytopic harvestmen species, such as Trogulus sp. Latreille, Dicranolasma scabrum (Herbst) and Platybunus bucephalus (C.L. Koch). Our results highlight the importance of intra-habitat heterogeneity of a harvestmen community., Ľudmila Černecká, Ivan Mihál, Benjamín Jarčuška., and Obsahuje bibliografii