Combining a biotin-enrichment protocol and 454GS-FLX titanium pyrosequencing technology, we characterised 22 polymorphic microsatellite loci from the parasitic wasp, Habrobracon hebetor (Say) (Hymenoptera: Braconidae), a cosmopolitan species commonly used in biological control against a wide range of both major lepidopterous pests of stored products and field crops in different parts of the world. Three multiplex PCR sets were optimised and characterised across 46 H. hebetor specimens from two samples collected from millet fields in Niger. Two to 11 alleles were found per locus and observed heterozygosity ranged from 0.289 to 0.826. Polymorphism was detected in both samples with a similar level of observed heterozygosity (0.482 vs. 0.502) and number of alleles (4.1 vs. 3.6). Deviation from Hardy-Weinberg equilibrium was detected at the same five loci in both samples and five or seven more loci in each sample but was not associated with heterozygote deficiencies. Even though evidence for linkage disequilibrium was found between a few alleles, these new loci segregated independently. The variability of the 22 loci will enable estimates of genetic diversity and structure patterns, as well as gene flow between H. hebetor populations at different spatial scales. Cross-species amplifications were successful among the six Bracon spp. tested and nine loci will be particularly appropriate for population genetic studies in B. brevicornis., Madougou Garba, Anne Loiseau, Laure Benoit, Nathalie Gauthier., and Obsahuje bibliografii
Allozyme polymorphism was investigated in adult males of the stenotopic peat bog (tyrphobiontic) noctuid moth, Coenophila subrosea Stephens, from three isolated peat bog localities in Austria (Styria) and Czech Republic (South and North Bohemia). Of the eighteen enzyme loci examined, twelve were polymorphic and six monomorphic. Significant deviations of genotype frequencies from Hardy-Weinberg equilibrium were observed at about one third of polymorphic loci within the populations. The average heterozygosities for the populations from three geographically distinct localities ranged from 0.192 to 0.245, and 61% of the loci were polymorphic. The FST mean value of 0.0675 was higher than that found in most other Lepidoptera. The genetic distances based on allozyme heterozygosity ranged from 0.019 to 0.051, with the population from South Bohemia being the most distant. The genetic distances and FST values do not reflect the geographic distances between the populations. Morphometric analysis revealed a difference between the Austrian Purgschachen Moor and Bohemian populations. These isolated relict peat bogs are habitat islands inhabited by unique "geographical races" of tyrphobiontic taxa., Jan Šula, Karel Spitzer, 4 obrázky, 5 tab., and Lit.
Two hundred and ninety-nine specimens of Atherina boyeri, collected from five Mediterranean sites (three from the open sea (Chioggia, Catania and Gaeta) and two from river mouths (the Birgi and S. Bartolomeo rivers) were analyzed in order to confirm previous genetic studies. Eigtheen loci were scored from 12 enzymatic systems, 3 of which were polymorphic: EST*, PGM* and PGI*. Mean Fst value (0.300, pFst and genetic distance revealed that samples from the river mouths (Birgi and S. Bartolomeo) were grouped separately from the open sea samples (Catania, Chioggia and Gaeta). These results are in agreement with the most recent classification, which considers A. boyeri as a complex of 3 different species.
Polymorphic microsatellite loci were characterised for two louse species, the anopluran Polyplax serrata Burmeister, 1839, parasitising Eurasian field mice of the genus Apodemus Kaup, and the amblyceran Myrsidea nesomimi Palma et Price, 2010, found on mocking birds endemic to the Galápagos Islands. Evolutionary histories of the two parasites show complex patterns influenced both by their geographic distribution and through coevolution with their respective hosts, which renders them prospective evolutionary models. In P. serrata, 16 polymorphic loci were characterised and screened across 72 individuals from four European populations that belong to two sympatric mitochondrial lineages differing in their breadth of host-specificity. In M. nesomimi, 66 individuals from three island populations and two host species were genotyped for 15 polymorphic loci. The observed heterozygosity varied from 0.05 to 0.9 in P. serrata and from 0.0 to 0.96 in M. nesomimi. Deviations from the Hardy-Weinberg equilibrium were frequently observed in the populations of both parasites. Fst distances between tested populations correspond with previous phylogenetic data, suggesting the microsatellite loci are an informative resource for ecological and evolutionary studies of the two parasites., Jana Martinů, Veronika Roubová, Milena Nováková, Vincent S. Smith, Václav Hypša, Jan Štefka., and Obsahuje bibliografii
A novel panel of 16 microsatellite markers, obtained by pyrosequencing of enriched genomic libraries, is reported for the flightless European bushcricket Ephippiger diurnus (Dufour) (Orthoptera: Tettigoniidae). Five multiplex and one simplex PCR protocols were optimized, and the polymorphism at the 16 loci was assessed in two natural populations from southern France. The mean allele number and (expected mean heterozygosity) were 8.94 (0.71) and 6.57 (0.70), respectively, in each population. Several loci were at Hardy-Weinberg disequilibrium (HWD), possibly due to the incidence of null alleles. The occurrence of null alleles has been previously reported for this species, and it is a common feature of microsatellite loci in Orthoptera. Cross-amplification tests demonstrated the transferability of some of these loci to other ephippigerine species. The microsatellite loci reported here substantially increase the number of available loci for this species and will afford an accurate picture of E. diurnus phylogeography, the genetic structure of its populations, and an improved understanding of the evolution of male song and other sexually-selected traits in this highly variable species., Yareli Esquer-Garrigos, Michael D. Greenfield, Virginie Party, Réjane Streiff., and Obsahuje bibliografii
Současná biologie se bouřlivě rozvíjí v oblasti genomiky. Tyto přístupy pronikají stále více do ekologie i evoluční biologie. Vznikl nový obor populační genomika, který propojuje terénní a laboratorní biologii. Využívá nové metodiky sekvenování a bioinformatických analýz, které v tomto článku stručně popisujeme a vysvětlujeme., Genomics is a rapidly developing field of modern biology. Novel genomic approaches are increasingly utilized in ecology and evolutionary biology. Population genomics has been recently established as a new discipline, connecting field and laboratory biology. It uses new sequencing methods as well as bioinformatic analyses, briefly described and explained in this article., and Helena Štorchová.
Genomická a transkriptomická studia u dvou druhů bublinatky (Utricularia gibba a bublinatky obecné - Utricularia vulgaris) přinesla průlomové poznatky. Ukázala, že miniaturní genom Utricularia gibba obsahuje zhruba stejný počet genů jako jiné kvetoucí rostliny a u některých genových rodin došlo k výrazné expanzi. To se týká např. genů zodpovědných za tvorbu kutikuly nebo za reakci na chitin, což souvisí s životním stylem této vodní masožravé rostliny. Současná nepřítomnost genů souvisejících s vývojem a funkcí kořene u obou druhů bublinatky naznačuje ztrátu „kořenových” genů u společného předka těchto druhů., Genomic and transcriptomic studies in Utricularia gibba and U. vulgaris have led to important discoveries. It was found that the miniature genome of U. gibba contained about the same number of genes as other angiosperms and that some gene families even expanded. For example, the genes responsible for cuticle development or the response to chitin are more numerous than in other plants, which may be related to the aquatic carnivorous lifestyle. Coincident absence of the genes associated with root development and function in U. gibba and U. vulgaris indicates the loss of the root genes already in their common ancestor., and Helena Štorchová.
Genetic differentiation of Rana temporaria from the Pyrenean and Cantabrian mountains in Spain was studied by means of allozyme electrophoresis. 24 loci were analysed in 104 specimens from 15 populations: nine populations from the Pyrenean massif, five populations from the area of the Cantabrian mountain chain (regions of Galicia, Asturias, and Basque Country), and one population from Germany. Three distinct clusters were distinguished by phenetic analysis: (a) the Pyrenean samples and the single population from the Basque Country, (b) the populations from Galicia and Asturias) and (c) the German population. Ordination (PCA) resulted in one principle component (PC1) that separated Cantabrian from Pyrenean populations, and in a second one (PC2) that separated the single German population from the Iberian ones. PC1 indicated introgression that was corroborated by west-east clines in several alleles along the Cantabrian chain. The rather clear separation of the Cantabrian and Pyrenean clusters (mean genetic distance 0.121) suggests that two genetically different subspecies of R. temporaria may be distinguished in Spain. The absence of fixed allelic differences between populations refutes recent hypotheses of the existence of syntopic sibling species within R. temporaria in Spain. Biogeographically, the Pyrenean and Cantabrian populations possibly originated in two separate colonisation events starting from different glacial refuges. The strong morphological differentiation of Pyrenean R. temporaria populations is not paralleled by genetic divergence, and may better be explained by ecological factors such as climate, altitude and vegetation.
Many factors contribute to the 'invasive potential' of species or populations. It has been suggested that the rate of genetic evolution of a species and the amount of genetic diversity upon which selection can act may play a role in invasiveness. In this study, we examine whether invasive species have a higher relative pace of molecular evolution as compared with closely related non-invasive species, as well as examine the genetic diversity between invasive and closely related species. To do this, we used mitochondrial cytochrome c oxidase subunit I sequences of 35 species with a European native range that are invasive in North America. Unique to molecular rate studies, we permuted across sequences when comparing each invasive species with its sister clade species, incorporating a range of recorded genetic variation within species using 405,765 total combinations of invasive, sister, and outgroup sequences. We observed no significant trend in relative molecular rates between invasive and non-invasive sister clade species, nor in intraspecific genetic diversity, suggesting that differences in invasive status between closely related lineages are not strongly determined by the relative overall pace of genetic evolution or molecular genetic diversity. We support previous observations of more often higher genetic diversity in native than invaded ranges using available data for this genetic region.
The pattern of postglacial re-colonization of Europe and the present population structure are known for various plant and animal species. The reed beetle Macroplea mutica (Fabricius, 1792) has characteristics that should influence both aspects in a peculiar way and therefore complement the currently known scenarios: It is fully aquatic but cannot swim or fly. Samples from 25 European populations of M. mutica and five specimens from China were investigated using amplified fragment length polymorphism (AFLP, 251 loci). Assessment of error rates associated with this method showed that the data set contains a strong population genetic signal. As hypothesized pronounced population differentiation and signs of inbreeding were found. Italian populations are clearly differentiated from northern populations (and from each other), which underlines the role of the Alps as a major barrier. Specimens from Lake Balaton (Hungary) show some affiliation with the populations in the Baltic Sea, which are all relatively similar. Populations from the eastern part of Northern Germany are similar to the Baltic populations, while those from the western part are allied to the British populations. The hypothesis is that the recolonization of Europe was from both the Southeast and a western refugium in the area of present-day southern England or Ireland, which resulted in a suture zone in Northern Germany. The effect of passive dispersal by drift attached to host plant material (especially in the Baltic Sea) and by zoochory (migrating waterfowl) is discussed.